Publication

Nguyen, N., Vo A. Won, K.J. () An advanced wavelet based method to detect ..., under review

Shen, L., Choi, I, Nestler, E.J., Won, K. J. (2013) Human transcriptome and chromatin modification: An ENCODE perspective , Genomics & Informatics, Accepted

Cho YW, Hong CJ, Hou A, Gent PM, Zhang K, WON KJ, Hamilton BA (2013) Zfp423 binds autoregulatory sites in P19 cell culture model, PLoS One, Accepted

Kim J, Hoffman JP, Alpaugh RK, Reichert M, Furth EE, Sepulveda AR, Rhim AD, Stanger BZ, Yuan CX, Won KJ, Donahue G, Sands J, Gumbs A, Zaret K (2013) Induced Pluripotent Stem Cells from Pancreatic Ductal Adenocarcinoma Can Recapitulate Early Stages of Cancer, Cell Reports, Accepted

Won, K. J.*, Zhang, X.*, Wang, T., Raha, D., Snyder, M., Ren, B., Wang, W. (2013) Comparative annotation of functional regions in the human genome using epigenomic data , Nucleic Acid Research, 41:8, 4423-4432

Rajakumari S., Wu J., Ishibashi J, Lim H.W., Won K.J. Reed, RR, Seale P. (2013) EBF2 determines and maintains brown adipocyte identity, Cell Metabolism, 17:4, 562-574

Xie R., Everett L.J.,Lim H.W., Patel N.A., Schug J, Kroon E., Kelly O.G., Wang A., D'Amour K.A., Robins A.J., Won K.J., Kaestner K.H. Sander M. (2013) Dynamic chromatin remodeling mediated by polycomb proteins orchestrates pancreatic differentiation of human embryonic stem cells , Cell Stem Cell, vol. 12, no., 2, pp. 224-237

You S.H., Lim H.W., Sun Z., Broache M., Won K.J., Lazar M.A. (2013) Nuclear receptor corepressors are required for the histone-deacetylase activity of HDAC3 in vivo, Nature Structural & Molecular Biology, vol. 20, pp. 182-187

Won, K. J.*, Prugel-Bennett, A., Sounders, C. (2013) Evolving Fisher Kernels for Biological Sequence Analysis, Evolutionary Computation, vol. 21, No. 1, pp. 83-105

Wozniak M.A., Cheng C.Q., Shen C.J., Gao L., Olarerin-George A.O., Won K. J., Hogenesch J.B., Chen C.S (2012) Adhesion Regulates MAP Kinase/Ternary Complex Factor Exchange to Control a Proliferative Transcription Switch, Current Biology, vol. 22, no. 21, pp. 2017-2016.

Won K. J.*, Xu Z.*, Zhang X.*, Whitaker J.W., Shoemaker R., Ren B., Xu Y., Wang W. (2012) Global identification of transcriptional regulators of pluripotency and differntiation in embryonic stem cells , Nucleic Acid Research, vol.40, no.17,pp.8199-8209 (Supple) Human Embryonic Stem cell Transcription Network

Won, K. J., Ren, B., Wang, W. (2010) Integrating chromatin modification and sequence information to identify functional transcription factor binding sites. Genome Biology , vol. 11:R7

Won, K. J., Argarwal, S.,Shen, L.,Shoemaker, R., Ren, B., Wang, W. (2009) An integrated approach to identify cis-regularoty modules in human genome. PLoS ONE , vol. 4, no. 5, pp.e5501, doi:10.1371/journal.pone.0005501

Won, K. J., Chepelev, I., Ren, B., Wang, W. (2008) Prediction of Regulatory Elements in Mammalian Genomes Using Chromatin Structure. BMC Bioinformatics, 9:547

Won, K. J., Sandelin, A., Marstrand, T., and Krogh, A. (2008) Modeling Promoter Grammars with Evolving Hidden Markov Models, Bioinformatics , vol.24, no.15,pp.1669-1675

Won, K. J., Hamelryck, T, Prugel-Bennett, A. and Krogh, A. (2007) An evolving method for learning HMM Structure: prediction of protein secondary structure. BMC Bioinformatics, 8:357

Won, K. J., Prugel-Bennett, A. and Krogh, A. (2006) Evolving the structure of Hidden Markov Models. IEEE Transactions on Evolutionary computation, Ävol. 10, no 1, pp.39-49

Won, K. J., Hamelryck, T, Prugel-Bennett, A. and Krogh, A. (2005) Evolving Hidden Markov Models for Protein Secondary Structure Prediction. Proceedings of the 2005 IEEE Congress on Evolutionary Computation, pp.33-40.

Won, K. J., Prugel-Bennett, A. and Krogh, A. (2004) The Block Hidden Markov Model for Biological Sequence Analysis. Lecture Notes in Artificial Intelligence. vol. 3213, pp.Ä64-70.

Won, K. J., Prugel-Bennett, A. and Krogh, A. (2004) Training HMM Structure with Genetic Algorithm for Biological Sequence Analysis. Bioinformatics. vol. 20, no. 18, pp:3613-3619